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10X Genomics ensembl reference genome grch38 v3 1 0
Ensembl Reference Genome Grch38 V3 1 0, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/grch38/cellranger/pmc09383695-554-15-22
Average 86 stars, based on 1 article reviews
ensembl reference genome grch38 v3 1 0 - by Bioz Stars, 2026-10
86/100 stars

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Article Title: Longitudinal multi-omics reveals pathogenic TSC2 variants disrupt developmental trajectories of human cortical organoids derived from Tuberous Sclerosis Complex
Article Snippet: The reference genome used for raw read alignment was GRCh38, also obtained from 10X Genomics.

Article Title: Biophysically interpretable inference of cell types from multimodal sequencing data.
Article Snippet: The mm10 https://cf.10xgenomics.com/supp/cell-exp/refdata-gex-mm10-2020-A.tar.gz and GRCh38 https://cf.10xgenomics.com/supp/cell-exp/refdata-gex-GRCh38-2020A.tar.gz (2020-A version) reference genomes used for pseudoalignment were downloaded from 10× Genomics.

Article Title: Immune evasion mechanisms in early-stage I high-grade serous ovarian carcinoma: insights into regulatory T cell dynamics.
Article Snippet: The scRNA-seq reads were aligned to the GRCh38 (version refdata-gexGRCh38-2020-A, 10X Genomics) human genome reference, and UMIs were quantified using Cell Ranger 6.1.1 (10X Genomics).

Article Title: Neoantigen DNA vaccines are safe, feasible, and induce neoantigen-specific immune responses in triple-negative breast cancer patients
Article Snippet: For BRC58, FASTQ files [ ] were aligned to GRCh38–2020 and GRCh38-alts-ensembl- 5.0.0 references provided by 10X Genomics, using Cellranger v7.0.1.

Article Title: A spatial transcriptomic signature of 26 genes resolved at single-cell resolution characterizes high-risk gastric cancer precursors.
Article Snippet: We used Cell Ranger (10x Genomics) version 3.1.0 mkfastq command to generate Fastq files and countwith default parameters aligned to GRCh38 to generate a matrix of unique molecular identifier (UMI) counts per gene and associated cell barcodes.

Article Title: Melanoma cell states shape spatial tumor-immune ecosystems to dictate the efficacy of anti-PD1 immunotherapy.
Article Snippet: 1_ GRCh38- 2020- A. csv probeset from 10X Genomics.

Article Title: Melanoma cell states shape spatial tumor-immune ecosystems to dictate the efficacy of anti-PD1 immunotherapy.
Article Snippet: 0_ GRCh38- 2020- A. csv probeset from 10X Genomics.

Article Title: snPATHO-seq, a versatile FFPE single-nucleus RNA sequencing method to unlock pathology archives
Article Snippet: GRCh38 (build 2020-A, 10X Genomics) was used as the reference for read mapping.



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